If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ), 'gf_id' => 'HOM05D000996', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000996' ), 'data_identifier' => 'HOM05D000996', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p08700' => 'bna', 'A01p08710' => 'bna', 'A03p13290' => 'bna', 'A03p58910' => 'bna', 'A05p39270' => 'bna', 'A07p00930' => 'bna', 'A07p00940' => 'bna', 'A08p19700' => 'bna', 'A09p12540' => 'bna', 'A09p59130' => 'bna', 'A09p59150' => 'bna', 'A10p13970' => 'bna', 'Aa31LG2G21100' => 'aar', 'Aa31LG2G21110' => 'aar', 'Aa31LG3G12460' => 'aar', 'Aa31LG8G16740' => 'aar', 'Aa31LG8G16750' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.938' => 'aag', 'Actinidia09011' => 'ach', 'Actinidia17509' => 'ach', 'Actinidia17510' => 'ach', 'Actinidia18211' => 'ach', 'Actinidia30294' => 'ach', 'Actinidia32644' => 'ach', 'Actinidia32645' => 'ach', 'Actinidia39129' => 'ach', 'Actinidia39773' => 'ach', 'Ah.09g230550' => 'amhyb', 'Ah.10g034720' => 'amhyb', 'Ah.14g083390' => 'amhyb', 'AL3G48470' => 'aly', 'AL3G48480' => 'aly', 'AL7G23080' => 'aly', 'AL7G23090' => 'aly', 'AL8G32420' => 'aly', 'Aqoxy2G02422' => 'aox', 'Aqoxy2G02434' => 'aox', 'Aqoxy7G01373' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2QIL7I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.70RE07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUF63Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0A8QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2HC9K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EG5910' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G44K46' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GDU18U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JB773H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PP4PHV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9TQYR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGTR4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UFMA6A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UV1P0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VVR15E' => 'arhy', 'AT2G19760' => 'ath', 'AT2G19770' => 'ath', 'AT4G29340' => 'ath', 'AT4G29350' => 'ath', 'AT5G56600' => 'ath', 'ATR0139G001' => 'atr', 'ATR0705G078' => 'atr', 'ATR0705G119' => 'atr', 'Atru.chr7.1484' => 'acertr', 'Atru.chr7.1485' => 'acertr', 'Atru.chr7.2048' => 'acertr', 'AUR62009219' => 'cqu', 'AUR62009220' => 'cqu', 'AUR62010871' => 'cqu', 'AUR62010873' => 'cqu', 'AUR62021384' => 'cqu', 'AUR62021386' => 'cqu', 'AUR62040218' => 'cqu', 'AUR62040219' => 'cqu', 'AUR62042733' => 'cqu', 'BcaB01g04410' => 'bca', 'BcaB03g12605' => 'bca', 'BcaB03g16765' => 'bca', 'BcaB08g34882' => 'bca', 'BcaB08g34883' => 'bca', 'BcaC01g01168' => 'bca', 'BcaC01g06434' => 'bca', 'BcaC03g14211' => 'bca', 'BcaC03g15978' => 'bca', 'BcaC04g20069' => 'bca', 'BcaC04g22829' => 'bca', 'BcaC04g22830' => 'bca', 'BcaC06g36620' => 'bca', 'BcaC06g36621' => 'bca', 'BcaC07g41237' => 'bca', 'BcaC07g41238' => 'bca', 'BcaC08g44584' => 'bca', 'BcaC09g50855' => 'bca', 'BcaC09g51715' => 'bca', 'BcaC09g51717' => 'bca', 'BcaNung00474' => 'bca', 'BcaNung06567' => 'bca', 'BolC1t00976H' => 'bol', 'BolC1t00978H' => 'bol', 'BolC1t01322H' => 'bol', 'BolC1t01915H' => 'bol', 'BolC2t07628H' => 'bol', 'BolC2t08164H' => 'bol', 'BolC3t13993H' => 'bol', 'BolC3t21242H' => 'bol', 'BolC4t23696H' => 'bol', 'BolC4t24388H' => 'bol', 'BolC6t37232H' => 'bol', 'BolC7t40614H' => 'bol', 'BolC7t40615H' => 'bol', 'BolC7t43486H' => 'bol', 'BolC7t46166H' => 'bol', 'BolC8t51804H' => 'bol', 'BolC8t51805H' => 'bol', 'BolC9t54387H' => 'bol', 'BolC9t54388H' => 'bol', 'BolC9t57671H' => 'bol', 'BraA01t00819Z' => 'bra', 'BraA01t00821Z' => 'bra', 'BraA03t10641Z' => 'bra', 'BraA03t14951Z' => 'bra', 'BraA07t27893Z' => 'bra', 'BraA07t27894Z' => 'bra', 'BraA08t33928Z' => 'bra', 'BraA09t36899Z' => 'bra', 'BraA09t36902Z' => 'bra', 'BraA09t41298Z' => 'bra', 'BraA09t41299Z' => 'bra', 'BraA10t43488Z' => 'bra', 'BraA10t45087Z' => 'bra', 'BraSC37t46143Z' => 'bra', 'C01p10230' => 'bna', 'C01p10250' => 'bna', 'C01p13490' => 'bna', 'C01p19870' => 'bna', 'C02p15110' => 'bna', 'C03p15560' => 'bna', 'C03p89320' => 'bna', 'C04p28420' => 'bna', 'C06p20510' => 'bna', 'C07p02090' => 'bna', 'C07p02100' => 'bna', 'C07p56880' => 'bna', 'C08p42430' => 'bna', 'C08p42440' => 'bna', 'C09p14880' => 'bna', 'C09p14890' => 'bna', 'C09p48210' => 'bna', 'CAN.G1759.6' => 'can', 'CAN.G1858.2' => 'can', 'CAN.G1964.1' => 'can', 'CAN.G309.62' => 'can', 'CAN.G446.1' => 'can', 'CAN.G9.2' => 'can', 'CANSAT56G0691' => 'cansat', 'CANSAT56G1381' => 'cansat', 'CANSAT56G2105' => 'cansat', 'CANSAT56G2707' => 'cansat', 'CANSAT56G4125' => 'cansat', 'CARHR110200' => 'chi', 'CARHR110230' => 'chi', 'CARHR237130' => 'chi', 'CARHR237140' => 'chi', 'CARHR270290' => 'chi', 'Carub.0003s3404' => 'cru', 'Carub.0003s3405' => 'cru', 'Carub.0007s1121' => 'cru', 'Carub.0007s1122' => 'cru', 'Carub.0008s1708' => 'cru', 'Ca_17371_v3' => 'car', 'Ca_17372_v3' => 'car', 'Ca_18155_v3' => 'car', 'Ca_25590_v3' => 'car', 'CBR_g16936' => 'cbr', 'Cc06_g10650' => 'ccan', 'Cc06_g10670' => 'ccan', 'Cc08_g09980' => 'ccan', 'CDE02G3598' => 'cde', 'CDE02G4648' => 'cde', 'CDE02G4681' => 'cde', 'CDE06G0889' => 'cde', 'CDE06G1223' => 'cde', 'CDE09G0817' => 'cde', 'CDE09G1105' => 'cde', 'Cfa003160' => 'cfa', 'Cfa003161' => 'cfa', 'Cfa003637' => 'cfa', 'Ciclev10009871m.g' => 'ccl', 'Ciclev10009877m.g' => 'ccl', 'Ciclev10026756m.g' => 'ccl', 'CiPaw.01G230500' => 'cil', 'CiPaw.02G145000' => 'cil', 'CiPaw.03G222200' => 'cil', 'CiPaw.03G222300' => 'cil', 'CiPaw.04G155000' => 'cil', 'CiPaw.04G155100' => 'cil', 'ClCG07G013380' => 'cla', 'ClCG09G000260' => 'cla', 'ClCG11G002020' => 'cla', 'ClCG11G015030' => 'cla', 'COL.COLO4_21005' => 'col', 'COL.COLO4_30528' => 'col', 'COL.COLO4_34718' => 'col', 'COL.COLO4_34719' => 'col', 'Cpa.g.sc78.33' => 'cpa', 'Cpa.g.sc78.34' => 'cpa', 'Cre10.g427250' => 'cre', 'CsaV3_2G001780' => 'csa', 'CsaV3_2G001790' => 'csa', 'CsaV3_3G023480' => 'csa', 'CSS0001182' => 'camsi', 'CSS0005562' => 'camsi', 'CSS0006546' => 'camsi', 'CSS0014732' => 'camsi', 'CSS0016384' => 'camsi', 'CSS0017163' => 'camsi', 'CSS0019334' => 'camsi', 'CSS0026301' => 'camsi', 'CSS0039920' => 'camsi', 'CSS0040215' => 'camsi', 'CSS0044222' => 'camsi', 'CSS0044895' => 'camsi', 'CSS0045876' => 'camsi', 'DCAR_004459' => 'dca', 'DCAR_007590' => 'dca', 'DCAR_024709' => 'dca', 'DCAR_026365' => 'dca', 'DCAR_028648' => 'dca', 'DCAR_031381' => 'dca', 'Dinv23398' => 'din', 'Dinv27938' => 'din', 'Dinv30426' => 'din', 'Dinv36717' => 'din', 'Dinv36718' => 'din', 'Dinv37968' => 'din', 'Dinv42263' => 'din', 'Dinv42264' => 'din', 'Duzib150G0392' => 'dzi', 'Duzib168G0596' => 'dzi', 'Duzib168G1971' => 'dzi', 'Duzib168G2128' => 'dzi', 'Duzib187G0492' => 'dzi', 'Duzib187G1579' => 'dzi', 'Duzib192G0823' => 'dzi', 'Duzib235G0308' => 'dzi', 'ECA234G1814' => 'eca', 'ECA240G1150' => 'eca', 'ECA240G3787' => 'eca', 'EL10Ac2g03968' => 'bvu', 'EL10Ac2g03969' => 'bvu', 'EL10Ac8g18361' => 'bvu', 'EL10Ac8g18363' => 'bvu', 'Eucgr.C00615' => 'egr', 'Eucgr.C00962' => 'egr', 'Eucgr.C03709' => 'egr', 'Eucgr.J02697' => 'egr', 'Eucgr.J02930' => 'egr', 'Eucgr.K02819' => 'egr', 'Eucgr.L01578' => 'egr', 'FAN05G4715' => 'fan', 'FAN09G2131' => 'fan', 'FAN09G2162' => 'fan', 'FAN14G0613' => 'fan', 'FAN15G0212' => 'fan', 'FAN19G0033' => 'fan', 'FAN19G2280' => 'fan', 'FAN19G2634' => 'fan', 'FAN20G1182' => 'fan', 'FAN23G2006' => 'fan', 'FAN23G2985' => 'fan', 'FAN24G2590' => 'fan', 'FAN26G1449' => 'fan', 'FAN26G2741' => 'fan', 'FAN27G3166' => 'fan', 'FAN28G1179' => 'fan', 'FAN28G1620' => 'fan', 'FvH4_1g06461' => 'fve', 'FvH4_1g06470' => 'fve', 'FvH4_2g26231' => 'fve', 'FvH4_2g35200' => 'fve', 'FvH4_5g38180' => 'fve', 'FvH4_6g32550' => 'fve', 'FvH4_6g33211' => 'fve', 'Glyma.01G005900' => 'gma', 'Glyma.05G225600' => 'gma', 'Glyma.05G225700' => 'gma', 'Glyma.07G125700' => 'gma', 'Glyma.08G032400' => 'gma', 'Glyma.08G032500' => 'gma', 'Glyma.08G032600' => 'gma', 'Glyma.15G020700' => 'gma', 'Gohir.A02G116900' => 'ghi', 'Gohir.A05G026500' => 'ghi', 'Gohir.A05G026600' => 'ghi', 'Gohir.A06G068300' => 'ghi', 'Gohir.A06G068400' => 'ghi', 'Gohir.A07G022213' => 'ghi', 'Gohir.A08G243600' => 'ghi', 'Gohir.A08G243700' => 'ghi', 'Gohir.A13G195000' => 'ghi', 'Gohir.D03G057600' => 'ghi', 'Gohir.D05G028400' => 'ghi', 'Gohir.D05G028500' => 'ghi', 'Gohir.D06G066900' => 'ghi', 'Gohir.D06G067000' => 'ghi', 'Gohir.D07G024266' => 'ghi', 'Gohir.D08G264500' => 'ghi', 'Gohir.D08G264550' => 'ghi', 'Gohir.D13G200700' => 'ghi', 'Gorai.001G025300' => 'gra', 'Gorai.003G061200' => 'gra', 'Gorai.004G282400' => 'gra', 'Gorai.004G282500' => 'gra', 'Gorai.009G028400' => 'gra', 'Gorai.009G028500' => 'gra', 'Gorai.010G078400' => 'gra', 'Gorai.010G078500' => 'gra', 'Gorai.013G229500' => 'gra', 'GSVIVG01015280001' => 'vvi', 'GSVIVG01015281001' => 'vvi', 'GSVIVG01016960001' => 'vvi', 'GSVIVG01035320001' => 'vvi', 'HanXRQChr03g0061081' => 'han', 'HanXRQChr03g0061091' => 'han', 'HanXRQChr09g0238811' => 'han', 'HanXRQChr09g0238821' => 'han', 'HanXRQChr10g0318851' => 'han', 'HanXRQChr10g0318861' => 'han', 'HanXRQChr12g0355161' => 'han', 'HanXRQChr12g0355171' => 'han', 'Haze_15860' => 'cav', 'Haze_25840' => 'cav', 'Haze_25841' => 'cav', 'Hma1.2p1_0012F.1_g007440' => 'hma', 'Hma1.2p1_0049F.1_g028260' => 'hma', 'Hma1.2p1_0151F.1_g067250' => 'hma', 'Hma1.2p1_0408F.1_g146610' => 'hma', 'Hma1.2p1_0430F.1_g151270' => 'hma', 'Hma1.2p1_0430F.1_g151280' => 'hma', 'Hma1.2p1_0663F.1_g198420' => 'hma', 'Hma1.2p1_0663F.1_g198430' => 'hma', 'Hma1.2p1_0690F.1_g204050' => 'hma', 'Hma1.2p1_1621F.1_g294030' => 'hma', 'HPP92_006385' => 'vpl', 'HPP92_009086' => 'vpl', 'HPP92_009807' => 'vpl', 'Hund03374' => 'sun', 'Hund09086' => 'sun', 'Hund26292' => 'sun', 'Lalb_Chr05g0223331' => 'lal', 'Lalb_Chr05g0223341' => 'lal', 'Lalb_Chr05g0223361' => 'lal', 'Lalb_Chr09g0331601' => 'lal', 'Lalb_Chr09g0331611' => 'lal', 'Lalb_Chr09g0331621' => 'lal', 'Lalb_Chr14g0371971' => 'lal', 'Lalb_Chr14g0371981' => 'lal', 'Lalb_Chr14g0371991' => 'lal', 'Lalb_Chr16g0388211' => 'lal', 'Lalb_Chr16g0388261' => 'lal', 'Lalb_Chr24g0396191' => 'lal', 'Lalb_Chr24g0397221' => 'lal', 'Lj2g0018069' => 'lja', 'Lj2g0019728' => 'lja', 'Lj4A371T18' => 'lonja', 'Lj4g0003525' => 'lja', 'Lj4g0027609' => 'lja', 'Lj5C51T10' => 'lonja', 'Lj7A667T67' => 'lonja', 'Lj7A667T68' => 'lonja', 'Lj7C697T7' => 'lonja', 'Lj9A514T54' => 'lonja', 'Lsat_1_v5_gn_5_144840' => 'lsa', 'Lsat_1_v5_gn_5_145241' => 'lsa', 'Lsat_1_v5_gn_7_39460' => 'lsa', 'Lsat_1_v5_gn_7_39500' => 'lsa', 'Lsat_1_v5_gn_8_87200' => 'lsa', 'Lsat_1_v5_gn_8_87220' => 'lsa', 'Manes.03G028300' => 'mes', 'Manes.03G028400' => 'mes', 'Manes.04G135100' => 'mes', 'Manes.11G032100' => 'mes', 'Manes.16G073000' => 'mes', 'Manes.16G107500' => 'mes', 'Manes.16G107600' => 'mes', 'Mapoly0013s0121' => 'mpo', 'Mapoly0047s0045' => 'mpo', 'MBI04_g07007_MAGBIO' => 'mbi', 'MBI04_g07008_MAGBIO' => 'mbi', 'MBI04_g07009_MAGBIO' => 'mbi', 'MCO11G409' => 'mco', 'MD02G1067900' => 'mdo', 'MD02G1068000' => 'mdo', 'MD08G1109600' => 'mdo', 'MD09G1201100' => 'mdo', 'MD09G1201400' => 'mdo', 'MD10G1247000' => 'mdo', 'MD15G1089500' => 'mdo', 'MD15G1199500' => 'mdo', 'MD15G1199600' => 'mdo', 'Medtr6g090030' => 'mtr', 'Medtr8g102330' => 'mtr', 'MELO3C004595.2' => 'cme', 'MELO3C004596.2' => 'cme', 'MELO3C013007.2' => 'cme', 'Migut.A00177' => 'egut', 'Migut.I00961' => 'egut', 'Migut.J01082' => 'egut', 'Migut.K00551' => 'egut', 'Migut.K00552' => 'egut', 'MSTRG.10597' => 'ama', 'MSTRG.10598' => 'ama', 'MSTRG.26393' => 'ama', 'MSTRG.26394' => 'ama', 'Nitab4.5_0000300g0170' => 'nta', 'Nitab4.5_0000318g0120' => 'nta', 'Nitab4.5_0000566g0250' => 'nta', 'Nitab4.5_0000566g0300' => 'nta', 'Nitab4.5_0000664g0070' => 'nta', 'Nitab4.5_0001107g0030' => 'nta', 'Nitab4.5_0001172g0160' => 'nta', 'Nitab4.5_0001991g0030' => 'nta', 'Nitab4.5_0002021g0120' => 'nta', 'Nitab4.5_0002423g0020' => 'nta', 'Nitab4.5_0003079g0030' => 'nta', 'Nitab4.5_0006620g0010' => 'nta', 'Nitab4.5_0006787g0050' => 'nta', 'Nn1g06708' => 'nnu', 'Nn2g12055' => 'nnu', 'Nn3g16264' => 'nnu', 'Nn6g31682' => 'nnu', 'Nn6g35348' => 'nnu', 'Nn6g35349' => 'nnu', 'Nn8g39032' => 'nnu', 'Nn8g39033' => 'nnu', 'Oeu000342.1' => 'oeu', 'Oeu008298.1' => 'oeu', 'Oeu019244.1' => 'oeu', 'Oeu021459.2' => 'oeu', 'Oeu036263.1' => 'oeu', 'Oeu036264.1' => 'oeu', 'Oeu036265.1' => 'oeu', 'Oeu042077.1' => 'oeu', 'Oeu048305.1' => 'oeu', 'Oeu048306.1' => 'oeu', 'Os01g0191150' => 'osa', 'Os06g0152100' => 'osa', 'Os10g0323600' => 'osa', 'Os10g0323900' => 'osa', 'Peaxi162Scf00177g00117' => 'pax', 'Peaxi162Scf00207g01228' => 'pax', 'Peaxi162Scf00247g00410' => 'pax', 'Peaxi162Scf00699g00639' => 'pax', 'Peaxi162Scf00944g00141' => 'pax', 'Peaxi162Scf00944g00149' => 'pax', 'PGR031G2436' => 'pgr', 'PGR102G1183' => 'pgr', 'PGR102G3376' => 'pgr', 'PGR142G0134' => 'pgr', 'PGR142G4422' => 'pgr', 'PGSC0003DMG400000291' => 'stu', 'PGSC0003DMG400016496' => 'stu', 'PGSC0003DMG400018557' => 'stu', 'PGSC0003DMG400025460' => 'stu', 'PGSC0003DMG400026837' => 'stu', 'PGSC0003DMG400037669' => 'stu', 'Phvul.002G307500' => 'pvu', 'Phvul.002G307600' => 'pvu', 'Phvul.002G307700' => 'pvu', 'Phvul.004G174400' => 'pvu', 'Phvul.005G165300' => 'pvu', 'Potri.001G190800' => 'ptr', 'Potri.003G047700' => 'ptr', 'Potri.006G235200' => 'ptr', 'Potri.018G057600' => 'ptr', 'Pp3c18_15960' => 'ppa', 'Pp3c18_17930' => 'ppa', 'Pp3c21_4900' => 'ppa', 'Pp3c21_4950' => 'ppa', 'PRCOL_00004375' => 'pco', 'PRCOL_00005622' => 'pco', 'Prupe.1G444100' => 'ppe', 'Prupe.1G504400' => 'ppe', 'Prupe.3G057200' => 'ppe', 'Prupe.7G217600' => 'ppe', 'Prupe.7G217700' => 'ppe', 'Psat7g018120' => 'psa', 'Psat7g018160' => 'psa', 'PSO063G4760' => 'pso', 'PSO210G1062' => 'pso', 'PSO210G4859' => 'pso', 'PSO832G2614' => 'pso', 'QL02p040713' => 'qlo', 'QL02p040735' => 'qlo', 'QL02p040762' => 'qlo', 'QL05p019639' => 'qlo', 'RcHm_v2.0_Chr1g0361111' => 'rch', 'RcHm_v2.0_Chr2g0092211' => 'rch', 'RcHm_v2.0_Chr2g0092221' => 'rch', 'RcHm_v2.0_Chr2g0092781' => 'rch', 'RcHm_v2.0_Chr2g0092851' => 'rch', 'RcHm_v2.0_Chr2g0140921' => 'rch', 'RcHm_v2.0_Chr5g0042941' => 'rch', 'RcHm_v2.0_Chr6g0294811' => 'rch', 'RcHm_v2.0_Chr6g0306741' => 'rch', 'Rhsim03G0014600' => 'rsi', 'Rhsim03G0017600' => 'rsi', 'Rhsim03G0236200' => 'rsi', 'Rhsim05G0027700' => 'rsi', 'Rhsim05G0027800' => 'rsi', 'Rhsim08G0228400' => 'rsi', 'Rhsim11G0049400' => 'rsi', 'Rhsim12G0203500' => 'rsi', 'Sabra01G0150700' => 'sbr', 'Sabra03G0029600' => 'sbr', 'Sabra06G0183600' => 'sbr', 'SalBow1G5483' => 'sbo', 'SalBow4G1266' => 'sbo', 'Sc08g0008090' => 'sci', 'Sc09g0009470' => 'sci', 'Sc14g0000440' => 'sci', 'Sc15g0001750' => 'sci', 'Sc18g0001590' => 'sci', 'Sc23g0005460' => 'sci', 'Sed0015249' => 'sed', 'Sed0015588' => 'sed', 'Sed0022306' => 'sed', 'Sed0025359' => 'sed', 'Sed0025812' => 'sed', 'Sed0027231' => 'sed', 'SEGI_40491' => 'sgi', 'SGA_v2.0_scaffold19G08705' => 'sas', 'SGA_v2.0_scaffold19G08718' => 'sas', 'SGA_v2.0_scaffold265G46058' => 'sas', 'SGA_v2.0_scaffold62G21566' => 'sas', 'SHI18244' => 'shi', 'SMO134G0017' => 'smo', 'Solyc06g066410.3' => 'sly', 'Solyc08g066110.3' => 'sly', 'Solyc11g070130.2' => 'sly', 'Solyc12g008590.3' => 'sly', 'Solyc12g044630.2' => 'sly', 'Sopen06g024700' => 'spe', 'Sopen08g019810' => 'spe', 'Sopen11g028800' => 'spe', 'Sopen11g028890' => 'spe', 'Sopen12g003530' => 'spe', 'Sopen12g023070' => 'spe', 'Sp3g33090' => 'spa', 'Sp3g33100' => 'spa', 'Sp6g18380' => 'spa', 'Sp7g27220' => 'spa', 'Sp7g27230' => 'spa', 'TAR383G0524' => 'tar', 'TAR383G0920' => 'tar', 'TAR624G0566' => 'tar', 'TAR624G0753' => 'tar', 'TAR624G1311' => 'tar', 'TAR626G0181' => 'tar', 'TAR626G0580' => 'tar', 'TAR636G2392' => 'tar', 'TAR636G2995' => 'tar', 'THA.LOC104803994' => 'tha', 'THA.LOC104803995' => 'tha', 'THA.LOC104811726' => 'tha', 'THA.LOC104811727' => 'tha', 'THA.LOC104814590' => 'tha', 'THA.LOC104814591' => 'tha', 'THA.LOC104820033' => 'tha', 'Thecc.06G101500' => 'tca', 'Thecc.09G048500' => 'tca', 'Thecc.09G098200' => 'tca', 'Thecc.09G098300' => 'tca', 'TPR.G23465' => 'tpr', 'TPR.G23477' => 'tpr', 'TPR.G33524' => 'tpr', 'TWI12G1052' => 'twi', 'TWI32G0659' => 'twi', 'TWI32G1215' => 'twi', 'TWI34G1309' => 'twi', 'TWI34G1414' => 'twi', 'TWI63G0486' => 'twi', 'TWI63G1115' => 'twi', 'TWI63G1256' => 'twi', 'unitig_0.g2543' => 'ugi', 'unitig_0.g2568' => 'ugi', 'unitig_32.g11585' => 'ugi', 'unitig_37.g12264' => 'ugi', 'unitig_748.g7446' => 'ugi', 'unitig_88.g27663' => 'ugi', 'vmacro00181' => 'vma', 'vmacro06257' => 'vma', 'vmacro08187' => 'vma', 'vmacro10841' => 'vma', 'vmacro10842' => 'vma', 'vmacro17008' => 'vma', 'vmacro18845' => 'vma', 'VMungo0251G0313' => 'vmu', 'VMungo0251G1777' => 'vmu', 'VMungo0464G1905' => 'vmu', 'Zm00001eb153760' => 'zma', 'Zm00001eb205650' => 'zma', 'Zm00001eb270920' => 'zma', 'Zm00001eb293600' => 'zma', 'Zm00001eb353570' => 'zma', 'Zm00001eb371220' => 'zma', 'Zm00001eb371230' => 'zma', 'Zm00001eb371440' => 'zma', 'Zm00001eb376740' => 'zma' ) $gf_id = 'HOM05D000996' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000996' ) $data_identifier = 'HOM05D000996' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 20, 'bra' => (int) 14, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 7, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 17, 'fve' => (int) 7, 'gma' => (int) 8, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 3, 'sun' => (int) 3, 'lal' => (int) 13, 'lja' => (int) 4, 'lonja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 9, 'mtr' => (int) 2, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 4, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 2, 'pso' => (int) 4, 'qlo' => (int) 4, 'rch' => (int) 9, 'rsi' => (int) 8, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 1, 'sas' => (int) 4, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 7, 'tca' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 8, 'ugi' => (int) 6, 'vma' => (int) 7, 'vmu' => (int) 3, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb376740' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1